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The highSpaClone Class

Source: R/utilities.R
highSpaClone-class.Rd

The highSpaClone Class

Slots

counts.data

Gene-by-cell raw count matrix.

location

The spatial coordinates of each cell.

chr_pos

The chromosome position corresponding to each bin, used for subsequent CNV heatmap drawing.

smoothed.data

Gene-by-cell smoothed count matrix by gene order.

cnv.data

Final CNV matrix. Dimension: cell-by-bin.

cluster

Tumor/Subclone label for each cell.

annotation

Cell type annotation information.

gene_order

Gene ordering information, contains chromosome, start, and stop position for each gene.

project

The name of the project.