Package index • highSpaClone

All functions

cnv_heatmap(): Chromosome-binned CNV heatmap with group annotations

createObject(): Create a highSpaClone object.

FindClone(): Tumor subclone identification with spatial regularization

FindTumor(): Tumor region annotation using reference (normal) cells

highSpaClone-class: The highSpaClone Class

smooth_expr(): Smooth expression along chromosomes (windowed running mean) with optional chunking/parallelism.

spatialplot(): Spatial scatter plot of inferred subclones

suggest_k(): Suggest the number of subclones (K) using average silhouette